PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_5EE86C5BC.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 323aa    MW: 35252.9 Da    PI: 6.2245
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_5EE86C5BC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-141564148
                           TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd+ lv+ +++ Gg+  +W+  ++  g++R++k+c++rw +yl
  Traes_2AL_5EE86C5BC.1 15 KGPWTEEEDKTLVEHIQKRGGHvgSWRGLPKAAGLNRCGKSCRLRWTNYL 64
                           79**********************************************97 PP

2Myb_DNA-binding51.81.9e-1670114147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg+++ eE+ l++ +++ lG++ W+tIa ++  gRt++++k++w+++
  Traes_2AL_5EE86C5BC.1  70 RGNFSDEEERLIIALHAGLGNR-WATIATHLE-GRTDNEIKNYWNTH 114
                            89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3591064IPR017930Myb domain
SuperFamilySSF466891.05E-2612111IPR009057Homeodomain-like
SMARTSM007171.0E-81466IPR001005SANT/Myb domain
PfamPF002493.5E-131564IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-211671IPR009057Homeodomain-like
CDDcd001679.33E-81764No hitNo description
PROSITE profilePS5129426.97765119IPR017930Myb domain
SMARTSM007171.7E-1569117IPR001005SANT/Myb domain
PfamPF002493.7E-1470114IPR001005SANT/Myb domain
CDDcd001671.09E-1172115No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2572119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGRSPCCCHD AGVKKGPWTE EEDKTLVEHI QKRGGHVGSW RGLPKAAGLN RCGKSCRLRW  60
TNYLRPDIKR GNFSDEEERL IIALHAGLGN RWATIATHLE GRTDNEIKNY WNTHIRKKLM  120
RMGVDPVTHQ QLPPDHHLDG TSASLMPEGL LWAAVAASLA GLDTGALRQA QLLQQLLQSI  180
GSNNDATNLI ANLAAANSVL NSSSSVVPSH LLQDQLNMLS GANCMQPGYL CNTSNFTGQD  240
VVQRQLINDM SPGTSSFAAA EPADHLCNTT AAFASHDVAP AVDMLPVQEL AGLMEPMELQ  300
LPNLCSLESD SFWKELLDDG YRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-281511927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM1569041e-134AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene).
GenBankBT0543981e-134BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds.
GenBankHQ8586911e-134HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581590.21e-144PREDICTED: transcription factor MYB39
TrEMBLW5AST10.0W5AST1_WHEAT; Uncharacterized protein
STRINGMLOC_12474.11e-133(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-69myb domain protein 9
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]